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Aliases & Descriptions for F10
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| EC 3.4.21.6 3 | | FX 2 | | FXA 2 | | OTTHUMP00000018735 2 | | prothrombinase 2 |
| | | Descriptions |
|---|
| Stuart factor 3 | | Stuart-Prower factor 2, 3 | | coagulation factor X 2 | | factor Xa 2 |
|
| | Search outside databases for aliases for F10 genePrevious GC identifers: GC13P112387 GC13P108414 GC13P112863 GC13P111725 |
Summaries for F10(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for F10: This gene encodes the vitamin K-dependent coagulation factor X of the blood coagulation cascade. This factor undergoes multiple processing steps before its preproprotein is converted to a mature two-chain form by the excision of the tripeptide RKR. Two chains of the factor are held together by 1 or more disulfide bonds; the light chain contains 2 EGF-like domains, while the heavy chain contains the catalytic domain which is structurally homologous to those of the other hemostatic serine proteases. The mature factor is activated by the cleavage of the activation peptide by factor IXa (in the intrisic pathway), or by factor VIIa (in the extrinsic pathway). The activated factor then converts prothrombin to thrombin in the presence of factor Va, Ca+2, and phospholipid during blood clotting. Mutations of this gene result in factor X deficiency, a hemorrhagic condition of variable severity. [provided by RefSeq] UniProtKB/Swiss-Prot: FA10_HUMAN, P00742Function: Factor Xa is a vitamin K-dependent glycoprotein that converts prothrombin to thrombin in the presence of factor Va, calcium and phospholipid during blood clottingGene Wiki entry for F10 (Factor_X) |
Genomic Location for F10
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the F10 gene 
Entrez Gene cytogenetic band: 13q34 Ensembl cytogenetic band: 13q34 HGNC cytogenetic band: 13q34F10 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 13 GeneLoc Exon Structure GeneLoc location for GC13P112825:
(about GC identifiers)
Start:
|
112,825,114 bp from pter |
End:
|
112,851,844 bp from pter |
Size:
|
26,731 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000013.9 NT_027140.6
| Proteins for F10
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: FA10_HUMAN, P00742 (See
protein sequence)Recommended Name: Coagulation factor X precursor Size: 488 amino acids; 54732 Da
Subunit: The two chains are formed from a single-chain precursor by the excision of two Arg residues and are held together by 1 or more disulfide bonds
Subcellular location: Secreted
PDB structures from and Proteopedia :1C5M (3D)
 1EZQ (3D)
 1F0R (3D)
 1F0S (3D)
 1FAX (3D)
 1FJS (3D)
 1FXY (3D)
 1G2L (3D)
 1G2M (3D)
 1HCG (3D)
 1IOE (3D)
 1IQE (3D)
 1IQF (3D)
 1IQG (3D)
 1IQH (3D)
 1IQI (3D)
 1IQJ (3D)
 1IQK (3D)
 1IQL (3D)
 1IQM (3D)
 1IQN (3D)
 1KSN (3D)
 1KYE (3D)
 1LPG (3D)
 1LPK (3D)
 1LPZ (3D)
 1LQD (3D)
 1MQ5 (3D)
 1MQ6 (3D)
 1MSX (3D)
 1NFU (3D)
 1NFW (3D)
 1NFX (3D)
 1NFY (3D)
 1NL8 (3D)
 1P0S (3D)
 1V3X (3D)
 1WU1 (3D)
 1XKA (3D)
 1XKB (3D)
 1Z6E (3D)
 2BMG (3D)
 2BOH (3D)
 2BOK (3D)
 2BQ6 (3D)
 2BQ7 (3D)
 2BQW (3D)
 2CJI (3D)
 2D1J (3D)
 2EI6 (3D)
 2EI7 (3D)
 2EI8 (3D)
 2FZZ (3D)
 2G00 (3D)
 2GD4 (3D)
 2H9E (3D)
 2J2U (3D)
 2J34 (3D)
 2J38 (3D)
 2J4I (3D)
 2J94 (3D)
 2J95 (3D)
 2JKH (3D)
 2P16 (3D)
 2P3F (3D)
 2P3T (3D)
 2P3U (3D)
 2P93 (3D)
 2P94 (3D)
 2P95 (3D)
 2PHB (3D)
 2PR3 (3D)
 2Q1J (3D)
 2RA0 (3D)
 2UWL (3D)
 2UWO (3D)
 2UWP (3D)
 2VH0 (3D)
 2VH6 (3D)
 2W26 (3D)
 2W3I (3D)
 2W3K (3D)
 3CEN (3D)
 3CS7 (3D)
 3ENS (3D)
 
Secondary accessions: Q14340Post-translational modifications:
The vitamin K-dependent, enzymatic carboxylation of some glutamate residues allows the modified protein to bind calcium1
N- and O-glycosylated1
The activation peptide is cleaved by factor IXa (in the intrinsic pathway), or by factor VIIa (in the extrinsic pathway)1
The iron and 2-oxoglutarate dependent 3-hydroxylation of aspartate and asparagine is (R) stereospecific within EGF domains1
REFSEQ proteins: NP_000495.1
ENSEMBL proteins: ENSP00000386320 ENSP00000387092 ENSP00000364701 ENSP00000364709
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for F10: Assays for F10: | Protein
Domains/ Families for F10(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P00742
ProtoNet protein and cluster: P00742 5/7 Blocks protein families (see all 7
): IPB000152 Aspartic acid and asparagine hydroxylation site IPB000294 Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain IPB001254 Serine protease IPB001314 Chymotrypsin serine protease family (S1) signature IPB001438 Type II EGF-like signature
UniProtKB/Swiss-Prot: FA10_HUMAN, P00742Similarity: Belongs to the peptidase S1 familySimilarity: Contains 2 EGF-like domainsSimilarity: Contains 1 Gla (gamma-carboxy-glutamate) domainSimilarity: Contains 1 peptidase S1 domain | Gene Function for F10
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000504
Applied Biosystems Silencer® siRNAs for F10
Sigma-Aldrich siRNA and siRNA Panels for F10  Sigma-Aldrich shRNA Panels and shRNA for F10  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000504                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000504                                  untagged cDNA clone in CMV expression vector: NM_000504 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000504
UniProtKB/Swiss-Prot: FA10_HUMAN, P00742Function: Factor Xa is a vitamin K-dependent glycoprotein that converts prothrombin to thrombin in the presence of factor Va, calcium and phospholipid during blood clottingCatalytic activity: Selective cleavage of Arg- -Thr and then Arg- -Ile bonds in prothrombin to form thrombinEnzyme Number (IUBMB): EC 3.4.21.6 Genatlas biochemistry entry for F10:coagulation factor X (Stuart Prower),vitamin K-dependent6 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for F10):
4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for F10
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 2 Sigma-Aldrich "Your Favorite Gene" Pathways for F10 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for F10 
5/59 Interacting proteins for F10 (P007421, 2 ENSP000003647093) via UniProtKB, MINT, and/or STRING (see all 59
)About this table
2 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for F10(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  | Sigma-Aldrich Small Molecules for F10: Inhibitor |
Browse Tocris compounds for F10 10/37 Novoseek chemical compound relationships for F10 gene (see all 37
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| rivaroxaban |
93.30 |
92 |
17938768 (3), 18307374 (3), 17595891 (3), 17873238 (2) (see all 50) |
| apixaban |
89.88 |
19 |
18315548 (3), 17868430 (2), 18393142 (1), 18814828 (1) (see all 14) |
| heparin pentasaccharide |
88.62 |
11 |
12353073 (2), 11854268 (1), 14532267 (1), 12871328 (1) (see all 8) |
| otamixaban |
82.09 |
11 |
17139573 (3), 17178269 (2), 16493482 (2), 15841331 (1) (see all 7) |
| gamma-carboxyglutamic acid |
80.80 |
41 |
8226763 (4), 17387172 (3), 9780208 (2), 8355279 (1) (see all 18) |
| phospholipid |
79.34 |
245 |
10456458 (7), 16403024 (4), 1989997 (3), 9538022 (3) (see all 99) |
| spectrozyme |
77.57 |
9 |
10995746 (2), 12540961 (1), 11389008 (1), 1579892 (1) (see all 6) |
| dabigatran |
77.27 |
8 |
18393142 (1), 18814828 (1), 18257025 (1), 18835010 (1) (see all 5) |
| dabigatran etexilate |
76.56 |
8 |
18473863 (1), 19204837 (1), 16906775 (1), 19229800 (1) (see all 5) |
| p-amino benzamidine |
74.06 |
6 |
8993332 (4), 1606162 (1) |
About this table
|
Transcripts for F10(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000504
Sigma-Aldrich siRNA and siRNA Panels for F10  Sigma-Aldrich shRNA Panels and shRNA for F10  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_000504 REFSEQ mRNAs for F10 gene: NM_000504.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000504               OriGene GFP tagged cDNA clone in CMV expression vector: NM_000504                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000504                                  untagged cDNA clone in CMV expression vector: NM_000504  Additional cDNA sequence: AK310772.1 AK310775.1 AK313798.1 BC040125.1 BC046125.1 CR603372.1 CR607773.1 CR623031.1 K01886.1 K03194.1 M22613.1 M57285.1 3 DOTS entries: DT.313355 DT.100676340 DT.120780844 24/72 AceView cDNA sequences (see all 72
):CB158437 BC046125 CR623031 BU846186 BP339855 BU849949 CD676150 M57285 CD014138 CB162539 CD013940 CR603372 BQ018853 K01886 BQ027447 BM709916 CA444781 CR607773 NM_000504 M22613 CD518821 BC040125 BM987312 BU848686
highest scoring ESTs for F10:AA484793 AA554502 AA635569 AA635577 AA724725 AA970666 AI033477 AI052362 AI160870 AI192868 Unigene Cluster for F10: Coagulation factor X Hs.361463 [show with all ESTs]Unigene Representative Sequence: BC040125
GeneLoc Exon Structure
5/6 Alternative Splicing Database (ASD) splice patterns (SP) for F10 (see all 6
)
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6a | · | 6b | ^ | 7a | · | 7b | ^ | 8a | · | 8b | · | 8c | ^ | 9a | · | 9b | · | 9c | |
| SP1: | |   | |   | |   | |   | - |   | |   | |   | - |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | - |   | |   | |   | - |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | - |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | - |   | |   | |   | - |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for F10
4 Ensembl transcripts including schematic representations: ENST00000410083
ENST00000409306
ENST00000375551
ENST00000375559
|
Expression for F10
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| F10 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for F10
1 / 2 / 3 3 probe-sets matching F10 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: CCCCGGAGGT
SOURCE GeneReport for Unigene cluster: Hs.361463
Expression variation in blood from EXPOLDB for F10 UniProtKB/Swiss-Prot: FA10_HUMAN, P00742Tissue specificity: Plasma; synthesized in the liver |
Orthologs for F10
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for F10 gene from 5/10 species (see all 10
)
About this table Species with no ortholog for F10
ENSEMBL Gene Tree for F10 | Paralogs for F10(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for F10 gene
- F92 F72
|
SNPs/Variants for F10(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for F10 (up to first 250kb)
|
Disorders & Mutations for F10
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 227600 10/80 Novoseek disease relationships for F10 gene (see all 80
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| factor x deficiency |
78.69 |
3 |
9799000 (1), 8449937 (1), 15569527 (1) |
| thromboembolism |
78.11 |
47 |
16409461 (2), 16241946 (2), 14650860 (2), 12172443 (1) (see all 38) |
| thrombosis |
74.79 |
69 |
10604970 (2), 11554940 (2), 12829728 (2), 15338955 (2) (see all 52) |
| scott syndrome |
74.31 |
5 |
1730083 (2), 9054648 (1), 19408196 (1), 11421293 (1) |
| deep vein thrombosis |
68.47 |
8 |
15091002 (1), 15554723 (1), 8029801 (1), 12750119 (1) (see all 8) |
| arterial thrombosis |
67.49 |
16 |
10813384 (1), 11177336 (1), 11342132 (1), 17729190 (1) (see all 13) |
| bleeding |
64.85 |
42 |
11554940 (2), 12829728 (2), 14633255 (2), 11177336 (1) (see all 36) |
| venous thrombosis |
63.03 |
24 |
11434677 (3), 9241747 (2), 9336303 (1), 10813384 (1) (see all 13) |
| hemophilia a |
62.01 |
3 |
2130929 (1), 14717973 (1), 16409469 (1) |
| quebec platelet disorder |
59.12 |
2 |
19408196 (1), 11421293 (1) |
About this table
Genatlas disease: F10 bleeding diathesis (FX deficiency) Human Gene Mutation Database: F10 Human Genome Epidemiology Navigator: F10 (9 documents)
|
Medical News for F10(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for F10 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/1073 PubMed articles for F10 gene (see all 1073
):- Structural basis for chemical inhibition of human blood coagulation factor Xa. (PubMed id 9618463)1, 3, 4 Kamata K.... Kim S.H. (1998)
- Structure of human des(1-45) factor Xa at 2.2-A resolution. (PubMed id 8355279)1, 3, 4 Padmanabhan K.... Kisiel W. (1993)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Characterization of single-nucleotide polymorphisms in coding regions of human genes. (PubMed id 10391209)3, 4 Cargill M....Lander E.S. (1999)
- Identification of O-linked oligosaccharide chains in the activation peptides of blood coagulation factor X. The role of the carbohydrate moieties in the activation of factor X. (PubMed id 8243461)3, 4 Inoue K. and Morita T. (1993)
- Cloning and expression in COS-1 cells of a full-length cDNA encoding human coagulation factor X. (PubMed id 1902434)3, 4 Messier T.L.... Church W.R. (1991)
- Cloning and characterization of the 5' end (exon 1) of the gene encoding human factor X. (PubMed id 2612918)3, 4 Jagadeeswaran P.... Lyman G. (1989)
- Isolation and characterization of human blood-coagulation factor X cDNA. (PubMed id 3011603)3, 4 Kaul R.K.... Jagadeeswaran P. (1986)
- Gene for human factor X: a blood coagulation factor whose gene organization is essentially identical with that of factor IX and protein C. (PubMed id 3768336)3, 4 Leytus S.P.... Davie E.W. (1986)
- Characterization of an almost full-length cDNA coding for human blood coagulation factor X. (PubMed id 2582420)3, 4 Fung M.R.... McGillivray R.T.A. (1985)
|
Search for F10
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing F10
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing F10
(According to HUGE)
About This Section
| -- |
Specialized Databases showing F10(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| Wikipedia | http://en.wikipedia.org/wiki/Factor_X | | SeattleSNPs | http://pga.gs.washington.edu/data/f10/ |
|
| | | About This Section
| --
| Services for F10(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for F10:

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|
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| | | | Search Tocris compounds for F10 |
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Incremental update: 13 Oct 2009
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