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CYP1A2 Gene(Protein Coding)

Cytochrome P450 Family 1 Subfamily A Member 2

GCID:
GC15P074748
GIFtS:
68
Genes Participants
UDN Logo

Aliases for CYP1A2 Gene

Aliases for CYP1A2 Gene

  • Cytochrome P450 Family 1 Subfamily A Member 2 2 3 5
  • Cytochrome P450, Subfamily I (Aromatic Compound-Inducible), Polypeptide 2 2 3
  • Cytochrome P450, Family 1, Subfamily A, Polypeptide 2 2 3
  • Cholesterol 25-Hydroxylase 3 4
  • Cytochrome P(3)450 3 4
  • Cytochrome P450-P3 3 4
  • Cytochrome P450 4 3 4
  • EC 1.14.14.1 4 61
  • CYPIA2 3 4
  • Flavoprotein-Linked Monooxygenase 3
  • Aryl Hydrocarbon Hydroxylase 3
  • Microsomal Monooxygenase 3
  • Xenobiotic Monooxygenase 3
  • Dioxin-Inducible P3-450 3
  • Cytochrome P450 1A2 3
  • P450 Form 4 3
  • P450(PA) 3
  • P3-450 3
  • CP12 3

External Ids for CYP1A2 Gene

Previous GeneCards Identifiers for CYP1A2 Gene

  • GC15M070968
  • GC15M068160
  • GC15P072617
  • GC15P072757
  • GC15P072828
  • GC15P075041
  • GC15P051838

Summaries for CYP1A2 Gene

Entrez Gene Summary for CYP1A2 Gene

  • This gene encodes a member of the cytochrome P450 superfamily of enzymes. The cytochrome P450 proteins are monooxygenases which catalyze many reactions involved in drug metabolism and synthesis of cholesterol, steroids and other lipids. The protein encoded by this gene localizes to the endoplasmic reticulum and its expression is induced by some polycyclic aromatic hydrocarbons (PAHs), some of which are found in cigarette smoke. The enzyme's endogenous substrate is unknown; however, it is able to metabolize some PAHs to carcinogenic intermediates. Other xenobiotic substrates for this enzyme include caffeine, aflatoxin B1, and acetaminophen. The transcript from this gene contains four Alu sequences flanked by direct repeats in the 3' untranslated region. [provided by RefSeq, Jul 2008]

GeneCards Summary for CYP1A2 Gene

CYP1A2 (Cytochrome P450 Family 1 Subfamily A Member 2) is a Protein Coding gene. Diseases associated with CYP1A2 include Cyp1a2-Related Altered Drug Metabolism and Toxicity Or Absent Response To Clozapine. Among its related pathways are Cytochrome P450 - arranged by substrate type and Estrogen metabolism. GO annotations related to this gene include enzyme binding and iron ion binding. An important paralog of this gene is CYP1A1.

UniProtKB/Swiss-Prot for CYP1A2 Gene

  • Cytochromes P450 are a group of heme-thiolate monooxygenases. In liver microsomes, this enzyme is involved in an NADPH-dependent electron transport pathway. It oxidizes a variety of structurally unrelated compounds, including steroids, fatty acids, and xenobiotics. Most active in catalyzing 2-hydroxylation. Caffeine is metabolized primarily by cytochrome CYP1A2 in the liver through an initial N3-demethylation. Also acts in the metabolism of aflatoxin B1 and acetaminophen. Participates in the bioactivation of carcinogenic aromatic and heterocyclic amines. Catalizes the N-hydroxylation of heterocyclic amines and the O-deethylation of phenacetin.

Gene Wiki entry for CYP1A2 Gene

PharmGKB "VIP" Summary for CYP1A2 Gene

No data available for CIViC summary , Tocris Summary , fRNAdb sequence ontologies and piRNA Summary for CYP1A2 Gene

Genomics for CYP1A2 Gene

Products:

  1. Regulatory Element

Regulatory Elements for CYP1A2 Gene

Enhancers for CYP1A2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15G074762 1.2 Ensembl ENCODE dbSUPER 0.4 +14.1 14095 1.1 SOX13 ZSCAN4 ZNF133 MAX ZNF398 GABPA OSR2 ZNF664 ZSCAN21 ZFHX2 RPP25 EDC3 CYP1A1 ULK3 CPLX3 LMAN1L CLK3 FAM219B ENSG00000212279 PTPN9
GH15G074730 1.2 ENCODE 0.4 -17.8 -17780 1.7 HDGF FOXA2 PKNOX1 MLX CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 ENSG00000260274 EDC3 CYP1A1 CYP1A2
GH15G074773 1.6 Ensembl ENCODE dbSUPER 0.3 +25.1 25080 0.9 FOXA2 PKNOX1 ARNT ZFP64 ARID4B YBX1 ZNF2 ZNF766 KLF13 JUNB CPLX3 LMAN1L COX5A FAM219B MPI SCAMP5 PTPN9 CSK CYP1A2
GH15G074770 1.5 Ensembl ENCODE dbSUPER 0.3 +22.5 22499 0.9 HDGF PKNOX1 ARNT ARID4B SIN3A GLI4 ZNF2 ZNF48 ZBTB7B ZNF121 ULK3 CPLX3 SCAMP5 PPCDC CSK CYP1A2
GH15G074752 0.6 ENCODE dbSUPER 0.7 +3.9 3852 0.2 MTA2 CYP1A1 EDC3 LMAN1L CSK CPLX3 ULK3 CLK3 MPI FAM219B ENSG00000212279
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CYP1A2 on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the CYP1A2 gene promoter:

Genomic Location for CYP1A2 Gene

Chromosome:
15
Start:
74,748,843 bp from pter
End:
74,756,600 bp from pter
Size:
7,758 bases
Orientation:
Plus strand

Genomic View for CYP1A2 Gene

Genes around CYP1A2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CYP1A2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CYP1A2 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for CYP1A2 Gene

Proteins for CYP1A2 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for CYP1A2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P05177-CP1A2_HUMAN
    Recommended name:
    Cytochrome P450 1A2
    Protein Accession:
    P05177
    Secondary Accessions:
    • Q16754
    • Q6NWU5
    • Q9BXX7
    • Q9UK49

    Protein attributes for CYP1A2 Gene

    Size:
    515 amino acids
    Molecular mass:
    58294 Da
    Cofactor:
    Name=heme; Xref=ChEBI:CHEBI:30413;
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for CYP1A2 Gene

    Alternative splice isoforms for CYP1A2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CYP1A2 Gene

Protein Expression for CYP1A2 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Selected DME Specific Peptides for CYP1A2 Gene

P05177:
  • LLQQLEFS
  • LEAFILE
  • TTAISWSL
  • QGDDFKGRP
  • CVFVNQWQ
  • YLPNPAL
  • ELDTVIG
  • RRPRLSDR
  • PHSTTRDT
  • YGDVLQI
  • WAARRRLAQ
  • FGAGFDT
  • FSIASDP
  • PILRYLP
  • LQRFKAFNQ
  • PEIQRKIQ
  • GKRRCIGE
  • SATELLL
  • PFTIPHST
  • VIGAMCFG
  • LTLGKNPH
  • TPIYGLT
  • FRPERFLT
  • LNGFYIP
  • DRPQLPY

Post-translational modifications for CYP1A2 Gene

  • Glycosylation at isoforms=269
  • Modification sites at PhosphoSitePlus

Other Protein References for CYP1A2 Gene

ENSEMBL proteins:
REFSEQ proteins:

Domains & Families for CYP1A2 Gene

Gene Families for CYP1A2 Gene

HGNC:
IUPHAR :

Protein Domains for CYP1A2 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for CYP1A2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P05177

UniProtKB/Swiss-Prot:

CP1A2_HUMAN :
  • Belongs to the cytochrome P450 family.
Family:
  • Belongs to the cytochrome P450 family.
genes like me logo Genes that share domains with CYP1A2: view

Function for CYP1A2 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
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  6. Cell Line

Molecular function for CYP1A2 Gene

GENATLAS Biochemistry:
cytochrome p450,family I (aromatic compound-inducible),member A2 (see CYP1@)
UniProtKB/Swiss-Prot BiophysicochemicalProperties:
Kinetic parameters: KM=4 uM for 2-amino-6-methyldipyrido[1,2-a:3,2-d]imidazole {ECO:0000269 PubMed:14725854}; KM=21 uM for 2-amino-3-methylimidazo[4,5-f]quinoline {ECO:0000269 PubMed:14725854}; KM=26 uM for 2-amino-2,4-dimethylimidazo[4,5-f]quinoline {ECO:0000269 PubMed:14725854}; KM=27 uM for 2-amino-3,8-dimethylimidazo[4,5-f]quinoxaline {ECO:0000269 PubMed:14725854}; KM=71 uM for 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine {ECO:0000269 PubMed:14725854}; KM=25 uM for phenacetin {ECO:0000269 PubMed:14725854};
UniProtKB/Swiss-Prot CatalyticActivity:
RH + [reduced NADPH--hemoprotein reductase] + O(2) = ROH + [oxidized NADPH--hemoprotein reductase] + H(2)O.
UniProtKB/Swiss-Prot Function:
Cytochromes P450 are a group of heme-thiolate monooxygenases. In liver microsomes, this enzyme is involved in an NADPH-dependent electron transport pathway. It oxidizes a variety of structurally unrelated compounds, including steroids, fatty acids, and xenobiotics. Most active in catalyzing 2-hydroxylation. Caffeine is metabolized primarily by cytochrome CYP1A2 in the liver through an initial N3-demethylation. Also acts in the metabolism of aflatoxin B1 and acetaminophen. Participates in the bioactivation of carcinogenic aromatic and heterocyclic amines. Catalizes the N-hydroxylation of heterocyclic amines and the O-deethylation of phenacetin.
UniProtKB/Swiss-Prot Induction:
By nicotine, omeprazole, phenobarbital, primidone and rifampicin.

Enzyme Numbers (IUBMB) for CYP1A2 Gene

Gene Ontology (GO) - Molecular Function for CYP1A2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004497 monooxygenase activity TAS --
GO:0005506 iron ion binding IEA --
GO:0009055 electron carrier activity TAS 2813353
GO:0016491 oxidoreductase activity IDA 16401082
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA --
genes like me logo Genes that share ontologies with CYP1A2: view
genes like me logo Genes that share phenotypes with CYP1A2: view

Animal Models for CYP1A2 Gene

MGI Knock Outs for CYP1A2:

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for CYP1A2 Gene

Localization for CYP1A2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CYP1A2 Gene

Endoplasmic reticulum membrane; Peripheral membrane protein. Microsome membrane; Peripheral membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CYP1A2 gene
Compartment Confidence
endoplasmic reticulum 5
plasma membrane 2
extracellular 2
mitochondrion 2
nucleus 2
cytosol 2
golgi apparatus 2
cytoskeleton 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for CYP1A2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005783 endoplasmic reticulum IEA --
GO:0005789 endoplasmic reticulum membrane TAS --
GO:0016020 membrane IEA --
GO:0031090 organelle membrane IEA --
GO:0043231 intracellular membrane-bounded organelle IDA,IEA 2813353
genes like me logo Genes that share ontologies with CYP1A2: view

Pathways & Interactions for CYP1A2 Gene

SuperPathways for CYP1A2 Gene

PathCards logo More details on SuperPathways for CYP1A2
SuperPathway Contained pathways
1 Cytochrome P450 - arranged by substrate type
Cytochrome P450 - arranged by substrate type
.64
Oxidation by Cytochrome P450
.64
Phase 1 - Functionalization of compounds
.63
Biological oxidations
.48
Phase II conjugation
.48
Xenobiotics
.39
Metapathway biotransformation
.36
Methylation
.01
Estradiol metabolism
.01
Fatty Acid Omega Oxidation
.01
2 Drug metabolism - cytochrome P450
Drug metabolism - cytochrome P450
.71
Metabolism of xenobiotics by cytochrome P450
.71
Chemical carcinogenesis
.70
Retinol metabolism
.34
Retinol metabolism
.32
Benzodiazepine Pathway, Pharmacokinetics
.01
Benzo[a]pyrene metabolism
.01
Aflatoxin B1 metabolism
.01
Arylamine metabolism
.01
3 Paroxetine Pathway, Pharmacokinetics
Imipramine/Desipramine Pathway, Pharmacokinetics
.57
Paroxetine Pathway, Pharmacokinetics
.57
Clopidogrel Pathway, Pharmacokinetics
.42
Clomipramine Pathway, Pharmacokinetics
.01
Aromatic amines can be N-hydroxylated or N-dealkylated by CYP1A2
.01
Lidocaine metabolism
.01
4 superpathway of tryptophan utilization
Tryptophan metabolism
.46
Tryptophan metabolism
.46
superpathway of tryptophan utilization
.31
melatonin degradation I
.01
superpathway of melatonin degradation
.01
5 Gefitinib Pathway, Pharmacokinetics
Imatinib Pathway, Pharmacokinetics/Pharmacodynamics
.58
Warfarin Pathway, Pharmacokinetics
.45
Erlotinib Pathway, Pharmacokinetics
.42
Pazopanib Pathway, Pharmacokinetics
.36
Doxepin Pathway, Pharmacokinetics
.01
genes like me logo Genes that share pathways with CYP1A2: view

Gene Ontology (GO) - Biological Process for CYP1A2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006629 lipid metabolic process IEA --
GO:0006706 steroid catabolic process IMP 18356043
GO:0006725 cellular aromatic compound metabolic process IEA --
GO:0006778 porphyrin-containing compound metabolic process IEA --
GO:0006805 xenobiotic metabolic process TAS --
genes like me logo Genes that share ontologies with CYP1A2: view

No data available for SIGNOR curated interactions for CYP1A2 Gene

Drugs & Compounds for CYP1A2 Gene

Products:

  1. Drug

(440) Drugs for CYP1A2 Gene - From: DrugBank, PharmGKB, ClinicalTrials, ApexBio, FDA Approved Drugs, HMDB, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Caffeine Approved Nutra Antagonist, Enzyme, substrate, inhibitor A1 and A2B antagonist. CNS stimulant 396
Carbamazepine Approved, Investigational Pharma Enzyme, substrate, inhibitor, inducer 132
Fluvoxamine Approved, Investigational Pharma Enzyme, substrate, inhibitor 48
Ketoconazole Approved, Investigational Pharma Pore Blocker, Enzyme, inhibitor Inhibitor of cyclosporine oxidase and testosterone 6 beta-hydroxylase, Cytochrome P450c17 inhibitor 175
Miconazole Approved, Investigational, Vet_approved Pharma Antagonist, Pore Blocker, Enzyme, inhibitor 3706

(108) Additional Compounds for CYP1A2 Gene - From: HMDB and Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
1,7-Dimethyluric acid
1-Methylxanthine
Aflatoxin B1
  • AFB1
  • AFBI
 1162-65-8
nadph
  • 2'-(Dihydrogen phosphate) 5'-(trihydrogen pyrophosphate) Adenosine 5'-ester with 1,4-dihydro-1-b-D-ribofuranosylnicotinamide
  • 2'-(Dihydrogen phosphate) 5'-(trihydrogen pyrophosphate) Adenosine 5'-ester with 1,4-dihydro-1-beta-delta-ribofuranosylnicotinamide
  • Adenosine 5'-(trihydrogen diphosphate) 2'-(dihydrogen phosphate) P'-5'-ester with 1,4-dihydro-1-beta-D-ribofuranosyl-3-pyridinecarboxamide
  • Adenosine 5'-(trihydrogen diphosphate) 2'-(dihydrogen phosphate) P'-5'-ester with 1,4-dihydro-1-beta-delta-ribofuranosyl-3-pyridinecarboxamide
  • b-NADPH
 53-57-6
Paraxanthine
  • 1,7-Dimethyl-Xanthine
  • 1,7-Dimethylxanthine
 611-59-6

(7) ApexBio Compounds for CYP1A2 Gene

Compound Action Cas Number
Abiraterone acetate Cytochrome p450 17a1 inhibitor 154229-18-2
Avasimibe ACAT inhibitor,orally bioavailable 166518-60-1
Gemfibrozil 25812-30-0
Ifosfamide Cytostatic agent 3778-73-2
Ketoconazole Inhibitor of cyclosporine oxidase and testosterone 6 beta-hydroxylase 65277-42-1
Methoxyresorufin 5725-89-3
Oltipraz An antischistosomal agent 64224-21-1
genes like me logo Genes that share compounds with CYP1A2: view

Drug Products

Transcripts for CYP1A2 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for CYP1A2 Gene

(1) REFSEQ mRNAs :
(10) Additional mRNA sequences :
(27) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CYP1A2 Gene

Cytochrome P450, family 1, subfamily A, polypeptide 2:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CYP1A2 Gene

No ASD Table

Relevant External Links for CYP1A2 Gene

GeneLoc Exon Structure for
CYP1A2
ECgene alternative splicing isoforms for
CYP1A2

Expression for CYP1A2 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CYP1A2 Gene

mRNA expression in normal human tissues for CYP1A2 Gene
mRNA expression by BioGPS for CYP1A2 GenemRNA expression by GTEx for CYP1A2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for CYP1A2 Gene

This gene is overexpressed in Liver (x51.8).

Protein differential expression in normal tissues from HIPED for CYP1A2 Gene

This gene is overexpressed in Gallbladder (51.2) and Liver (17.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for CYP1A2 Gene



Protein tissue co-expression partners for CYP1A2 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of CYP1A2 Gene:

CYP1A2

SOURCE GeneReport for Unigene cluster for CYP1A2 Gene:

Hs.1361

mRNA Expression by UniProt/SwissProt for CYP1A2 Gene:

P05177-CP1A2_HUMAN
Tissue specificity: Liver.

Evidence on tissue expression from TISSUES for CYP1A2 Gene

  • Liver(4.8)
  • Urine(2.6)
  • Blood(2.5)
  • Intestine(2.3)
genes like me logo Genes that share expression patterns with CYP1A2: view

Primer Products

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for CYP1A2 Gene

Orthologs for CYP1A2 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for CYP1A2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia CYP1A2 35
  • 98 (a)
 OneToOne
LOC735881 34
  • 92.81 (n)
cow
(Bos Taurus)
 Mammalia CYP1A2 34 35
  • 85.14 (n)
dog
(Canis familiaris)
 Mammalia CYP1A2 34 35
  • 84.31 (n)
rat
(Rattus norvegicus)
 Mammalia Cyp1a2 34
  • 80.6 (n)
mouse
(Mus musculus)
 Mammalia Cyp1a2 34 16 35
  • 80.01 (n)
oppossum
(Monodelphis domestica)
 Mammalia -- 35
  • 65 (a)
 ManyToMany
-- 35
  • 65 (a)
 ManyToMany
platypus
(Ornithorhynchus anatinus)
 Mammalia -- 35
  • 65 (a)
 OneToMany
chicken
(Gallus gallus)
 Aves CYP1A1 35
  • 60 (a)
 ManyToMany
CYP1A4 35
  • 55 (a)
 ManyToMany
lizard
(Anolis carolinensis)
 Reptilia -- 35
  • 59 (a)
 ManyToMany
-- 35
  • 56 (a)
 ManyToMany
-- 35
  • 54 (a)
 ManyToMany
zebrafish
(Danio rerio)
 Actinopterygii cyp1a 35
  • 53 (a)
 OneToMany
rainbow trout
(Oncorhynchus mykiss)
 Actinopterygii Omy.11738 34
fruit fly
(Drosophila melanogaster)
 Insecta Cyp307a1 36
  • 26 (a)
spok 35
  • 23 (a)
 ManyToMany
spo 35
  • 22 (a)
 ManyToMany
thale cress
(Arabidopsis thaliana)
 eudicotyledons CYP703A2 34
  • 41.45 (n)
rice
(Oryza sativa)
 Liliopsida Os08g0131100 34
  • 44.3 (n)
sea squirt
(Ciona savignyi)
 Ascidiacea -- 35
  • 30 (a)
 ManyToMany
-- 35
  • 19 (a)
 ManyToMany
Species where no ortholog for CYP1A2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CYP1A2 Gene

ENSEMBL:
Gene Tree for CYP1A2 (if available)
TreeFam:
Gene Tree for CYP1A2 (if available)

Paralogs for CYP1A2 Gene

Paralogs for CYP1A2 Gene

(25) SIMAP similar genes for CYP1A2 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with CYP1A2: view

Variants for CYP1A2 Gene

Polymorphic Variants from UniProtKB/Swiss-Prot for CYP1A2 Gene

CP1A2_HUMAN-P05177
The CYP1A2*1F allele which is quite common (40 to 50%) is due to a substitution of a base in the non-coding region of the CYP1A2 gene and has the effect of decreasing the enzyme inducibility. Individuals who are homozygous for the CYP1A2*1F allele are slow caffeine metabolizers. Thus for these individual increased intake of caffeine seems to be associated with a concomitant increase in the risk of non-fatal myocardial infraction (MI).

Sequence variations from dbSNP and Humsavar for CYP1A2 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1000539344 -- 74,751,037(+) TACCA(A/G/T)CTCCT intron-variant
rs1001162410 -- 74,753,008(+) TTAAA(G/T)AACAG intron-variant
rs1001244975 -- 74,756,353(+) CTCAA(A/G)TGATC utr-variant-3-prime
rs1001753001 -- 74,749,364(+) CTTTG(A/G)TACAA intron-variant
rs1001805272 -- 74,749,647(+) CATCA(G/T)TGTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CYP1A2 Gene

Variant ID Type Subtype PubMed ID
esv3581763 CNV loss 25503493
nsv1121512 CNV deletion 24896259
nsv833055 CNV loss 17160897

Variation tolerance for CYP1A2 Gene

Residual Variation Intolerance Score: 79.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.60; 44.99% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CYP1A2 Gene

Human Gene Mutation Database (HGMD)
CYP1A2
The Human Cytochrome P450 Allele Nomenclature Database
CYP1A2
SNPedia medical, phenotypic, and genealogical associations of SNPs for
CYP1A2

Disorders for CYP1A2 Gene

MalaCards: The human disease database

(19) MalaCards diseases for CYP1A2 Gene - From: GeneTests, Orphanet, DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
cyp1a2-related altered drug metabolism
  • phenacetin metabolism, defect in
toxicity or absent response to clozapine
porphyria cutanea tarda
  • porphyria, hepatoerythropoietic
hepatocellular adenoma
extraskeletal mesenchymal chondrosarcoma
  • mesenchymal extraosseous chondrosarcoma
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for CYP1A2

Genetic Association Database (GAD)
CYP1A2
Human Genome Epidemiology (HuGE) Navigator
CYP1A2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CYP1A2
genes like me logo Genes that share disorders with CYP1A2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CYP1A2 Gene

Publications for CYP1A2 Gene

  1. Genetic polymorphisms of estrogen metabolizing enzyme and breast cancer risk in Thai women. (PMID: 19415745) Sangrajrang S. … Yoshida T. (Int. J. Cancer 2009) 3 22 46 64
  2. Influence of genetic polymorphisms, smoking, gender and age on CYP1A2 activity in a Turkish population. (PMID: 19450128) Gunes A. … Dahl M.L. (Pharmacogenomics 2009) 3 22 46 64
  3. CYP1A2, GSTM1, and GSTT1 polymorphisms and diet effects on CYP1A2 activity in a crossover feeding trial. (PMID: 19843669) Peterson S. … Lampe J.W. (Cancer Epidemiol. Biomarkers Prev. 2009) 3 22 46 64
  4. [Association of cytochrome P450 genes polymorphisms (CYP1A1 and CYP1A2) with the development of chronic obstructive pulmonary disease in Bashkortostan]. (PMID: 18389617) Korytina G.F. … Viktorova T.V. (Mol. Biol. (Mosk.) 2008) 3 22 46 64
  5. Genetic polymorphisms in estrogen-metabolizing genes and breast cancer survival. (PMID: 17429315) Long J.R. … Zheng W. (Pharmacogenet. Genomics 2007) 3 22 46 64

Products for CYP1A2 Gene

  • Cloud-Clone Corp. Antibodies for CYP1A2
  • Cloud-Clone Corp. Proteins for CYP1A2
  • Cloud-Clone Corp Assay Kits for CYP1A2

Sources for CYP1A2 Gene

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