CYP19A1 Gene
protein-coding GIFtS : 66
GC15M049288
cytochrome P450, family 19, subfamily A, polypeptide 1 (Previous names: cytochrome P450, subfamily XIX (aromatization of androgens) )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbol: CYP19 )
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Aliases & Descriptions for CYP19A1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases ARO 1 , 2 , 5 ARO1 1 , 2 , 3 Aromatase 3 CPV1 1 , 2 CYAR 1 , 2 , 3 CYP19 2 , 3 , 5 CYPXIX 3 EC 1.14.14.1 3 MGC104309 2 OTTHUMP00000162543 2 P-450AROM 1 , 2 , 3 aromatase 1 , 2
Descriptions Estrogen synthetase 2 , 3 cytochrome P450, family 19 2 cytochrome P450, family 19, subfamily A, polypeptide 1 2 cytochrome P450, subfamily XIX (aromatization of androgens) 1 , 2 flavoprotein-linked monooxygenase 2 microsomal monooxygenase 2
Search outside databases for aliases for CYP19A1 genePrevious GC identifers: GC15M044547 GC15M049080 GC15M049217
Summaries for CYP19A1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for CYP19A1 : This gene encodes a member of the cytochrome P450 superfamily of enzymes. The cytochrome P450proteins are monooxygenases which catalyze many reactions involved in drug metabolism andsynthesis of cholesterol, steroids and other lipids. This protein localizes to the endoplasmicreticulum and catalyzes the last steps of estrogen biosynthesis, three successive hydroxylationsof the A ring of androgens. Mutations in this gene can result in either increased or decreasedaromatase activity; the associated phenotypes suggest that estrogen functions both as a sexsteroid hormone and in growth or differentiation. The gene expresses two transcript variants.[provided by RefSeq] UniProtKB/Swiss-Prot: CP19A_HUMAN, P11511 Function : Catalyzes the formation of aromatic C18 estrogens from C19 androgens
Gene Wiki entry for CYP19A1 (Aromatase)
Genomic Location for CYP19A1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the CYP19A1 gene Entrez Gene cytogenetic band: 15q21.1 Ensembl cytogenetic band: 15q21.2 HGNC cytogenetic band: 15q21 CYP19A1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 15 GeneLoc Exon Structure
GeneLoc location for GC15M049288:
(about GC identifiers )
Start:
49,287,546 bp from pter
End:
49,418,099 bp from pter
Size:
130,554 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000015.8 NT_010194.16 Proteins for CYP19A1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: CP19A_HUMAN, P11511 (See
protein sequence )Recommended Name: Cytochrome P450 19A1 Size : 503 amino acids; 57883 Da
Cofactor : Heme group
Subcellular location : Membrane; Peripheral membrane protein
PDB structure from and Proteopedia : 1TQA (3D)
 3EQM (3D)
 
Secondary accessions : Q16731 Q3B764 Q58FA0
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_000094.2 NP_112503.1 ENSEMBL proteins: ENSP00000384389 ENSP00000379685 ENSP00000379683 ENSP00000260433 ENSP00000383930 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for CYP19A1: Assays for CYP19A1:
Protein
Domains/ Families for CYP19A1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P11511 ProtoNet protein and cluster: P11511
UniProtKB/Swiss-Prot: CP19A_HUMAN, P11511 Similarity : Belongs to the cytochrome P450 family
Gene Function for CYP19A1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_031226 Applied Biosystems Silencer ® siRNAs for CYP19A1 Sigma-Aldrich siRNA and siRNA Panels for CYP19A1 Sigma-Aldrich shRNA for CYP19A1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000103                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000103                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_000103  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000103 UniProtKB/Swiss-Prot: CP19A_HUMAN, P11511 Function : Catalyzes the formation of aromatic C18 estrogens from C19 androgensCatalytic activity : RH + reduced flavoprotein + O(2) = ROH + oxidized flavoprotein + H(2)OEnzyme Number (IUBMB): EC 1.14.14.1
15/16 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Cyp19a1) (see all 16
):5 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for CYP19A1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/7 Sigma-Aldrich "Your Favorite Gene" Pathways for CYP19A1 (Your Favorite Gene powered by Ingenuity) (see all 7
) Gene Network CentralTM Interacting Genes and Proteins Network for CYP19A1 5/112 Interacting proteins for CYP19A1 (ENSP00000260433 3 P11511 2 ) via UniProtKB, MINT, and/or STRING (see all 112
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
About this table
Drugs & Compounds for CYP19A1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for CYP19A1
Compounds for CYP19A1 available from Tocris Bioscience Compound Action
CAS
number YM 511 Potent aromatase (CYP19) inhibitor [148869-05-0] Anastrozole Potent aromatase (CYP19) inhibitor [120511-73-1]
About this table 10/35 Novoseek chemical compound relationships for CYP19A1 gene (see all 35
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
androstenedione
91.50
258
8476772 (6), 1827700 (4), 8425476 (3), 11916223 (2) (see all 99 )
estradiol
89.76
422
17588628 (5), 2041267 (4), 17005180 (3), 10084953 (3) (see all 99 )
steroidal
88.65
272
9797017 (7), 8925290 (3), 9597182 (3), 10474272 (3) (see all 99 )
17beta-hydroxysteroid
88.22
133
9929167 (4), 11205867 (3), 9626631 (2), 15876411 (2) (see all 99 )
androst-4-ene-3,6,17-trione
83.57
14
8937433 (2), 8129748 (2), 2304374 (1), 7655426 (1) (see all 11 )
rogletimide
83.41
12
2353556 (4), 1659868 (1), 1931611 (1), 7949204 (1) (see all 6 )
16alpha-hydroxyandrostenedione
81.47
7
10993239 (2), 11379781 (1), 2007137 (1), 12808307 (1) (see all 6 )
19-oxoandrostenedione
80.64
1
2304374 (1)
steroid
80.17
254
1641076 (5), 8476778 (4), 17972413 (3), 17728860 (3) (see all 99 )
ym-511
79.91
11
7577709 (3), 8809200 (3), 8904814 (1), 9085555 (1) (see all 6 )
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Transcripts for CYP19A1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
OriGene , Expression Assays from Applied Biosystems )About This Section
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_031226 Sigma-Aldrich siRNA and siRNA Panels for CYP19A1 Sigma-Aldrich shRNA for CYP19A1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_000103 NM_031226
REFSEQ mRNAs for CYP19A1 gene (2 alternative transcripts): NM_000103.3 NM_031226.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000103 NM_031226
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000103                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000103                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_000103  
Additional cDNA sequence: AK291778.1 BC020767.1 BC022896.1 BC035714.1 BC035959.1 BC056258.1 BC107785.1 CR591944.1 CR594831.1 CR610414.1 CR615188.1 CR617535.1 CR617751.1 CR619515.1 CR620604.1 CR621023.1 CR622060.1 CR622116.1 DQ118405.1 J04127.1 M18856.1 M22246.1 M28420.1 S52789.1 S52793.1 S52794.1 S58866.1 S85075.1 S96437.1 X13589.1 Y07508.1
24/62 DOTS entries (see all 62
): DT.449261 DT.100676727 DT.95300279 DT.101970966 DT.100869537 DT.91861766 DT.121057178 DT.100854649 DT.100676716 DT.121057258 DT.121057260 DT.303062 DT.40215192 DT.91787024 DT.100676720 DT.100676725 DT.121057024 DT.100660172 DT.121056960 DT.70102672 DT.121057151 DT.92416133 DT.121057217 DT.70101056
24/577 AceView cDNA sequences (see all 577
):BQ023342 N54268 BX361525 CR622116 BX339221 S52793 S52794 BG572026 BG434800 BG572661 CR619515 BU751976 BQ015412 AL541373 AI436047 BU751889 BG621317 BC035714 H03482 D79084 H03577 CR615188 NM_031226 CR610414
highest scoring ESTs for CYP19A1 :X13589 AA368214 AL540982 AL541360 AL541373 AL543759 AL551641 AU100175 BC020767 BC022896
Unigene Cluster for CYP19A1: Cytochrome P450, family 19, subfamily A, polypeptide 1 Hs.260074 [show with all ESTs ] Unigene Representative Sequence: NM_031226 GeneLoc Exon Structure 5/12 Alternative Splicing Database (ASD) splice patterns (SP) for CYP19A1 (see all 12
) ExUns: 1 ^ 2a · 2b ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9a · 9b ^ 10a · 10b ^ 11 ^ 12a · 12b · 12c ^ 13a · 13b ^ 14 ^ 15a · 15b ^ 16a · 16b ^ SP1 :                   -                   -           -       SP2 :                                     -           -       SP3 :           -   -   -   -   -                                   SP4 :                                     -                 SP5 :   -   -   -   -   -   -   -   -   -                                  
About this scheme ECgene alternative splicing isoforms for CYP19A1 5 Ensembl transcripts including schematic representations : ENST00000405011
ENST00000396404
ENST00000396402
ENST00000260433
ENST00000405913
Expression for CYP19A1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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CYP19A1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for CYP19A1 1 / 2 / 3
12 probe-sets matching CYP19A1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.260074 Expression variation in blood from EXPOLDB for CYP19A1
UniProtKB/Swiss-Prot: CP19A_HUMAN, P11511 Tissue specificity : Brain, placenta and gonads
Orthologs for CYP19A1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for CYP19A1 gene from 5/9 species (see all 9
)
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
dog (Canis familiaris)
CYP191
--
aromatase
87.98(n) 86.25(a)
494003 NM_001008715.1 NP_001008715.1
chimpanzee (Pan troglodytes)
CYP19A11
--
cytochrome P450, family 19, subfamily A, polypeptide more
99.8(n) 99.8(a)
453433 XM_001169384.1 XP_001169384.1
cow (Bos taurus)
CYP191
--
cytochrome P450, family XIX (conversion of androgen more
86.39(n) 84.06(a)
281740 NM_174305.1 NP_776730.1
rat (Rattus norvegicus)
Cyp19a11
--
cytochrome P450, family 19, subfamily a, polypeptide more
80.69(n) 77.85(a)
25147 NM_017085.1 NP_058781.1
mouse (Mus musculus)
Cyp19a11 , 5
9 (31.00 cM) 5
cytochrome P450, family 19, subfamily a, polypeptide more 1, 5
81.41(n) 1 79.48(a) 1
13075 1 NM_007810.2 1 NP_031836.1 1 AK143323 5 BC103670 5 (see all 12 )
About this table Species with no ortholog for CYP19A1 ENSEMBL Gene Tree for CYP19A1 Paralogs for CYP19A1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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--
SNPs/Variants for CYP19A1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for CYP19A1 (up to first 250kb)
Disorders & Mutations for CYP19A1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 107910 UniProtKB/Swiss-Prot: CP19A_HUMAN, P11511
Defects in CYP19A1 are a cause of familial gynecomastia [MIM:139300]. This ischaracterized by an estrogen excess due to an increased aromatase activity Defects in CYP19A1 are the cause of aromatase deficiency (AROD) [MIM:107910]. AROD is arare disease in which fetal androgens are not converted into estrogens due to placental aromatasedeficiency. Thus, pregnant women exhibit a hirsutism, which spontaneously resolves afterpost-partum. At birth, female babies present with pseudohermaphroditism due to virilization ofextern genital organs. In adult females, manifestations include delay of puberty, breasthypoplasia and primary amenorrhoea with multicystic ovaries
10/93 Novoseek disease relationships for CYP19A1 gene (see all 93
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
breast cancer
92.00
2156
10731105 (7), 17020418 (6), 9568066 (6), 15814851 (6) (see all 99 )
breast cancer metastatic
83.56
101
9786093 (3), 11129731 (3), 16940812 (3), 9350235 (2) (see all 78 )
endometrial cancer
75.45
111
8476761 (5), 17404019 (5), 15846217 (4), 15788666 (4) (see all 53 )
endometriosis
73.27
236
8550748 (5), 18048499 (5), 10593363 (4), 17687621 (4) (see all 94 )
gynecomastia
72.05
45
16392624 (4), 18426832 (4), 8768875 (3), 10731125 (3) (see all 28 )
virilization
66.75
18
10599737 (2), 18804292 (2), 9300203 (1), 8200927 (1) (see all 16 )
breast carcinoma
66.44
132
18622573 (6), 18480557 (5), 8603035 (3), 11274648 (3) (see all 76 )
endocrine effects
64.74
16
11900212 (1), 15837728 (1), 17996443 (1), 7954417 (1) (see all 13 )
polycystic ovary syndrome
64.09
16
12477517 (2), 17162711 (2), 8855823 (1), 1424181 (1) (see all 12 )
choriocarcinoma
63.41
64
9328212 (3), 8182306 (2), 9365197 (2), 9528950 (2) (see all 32 )
About this table Human Gene Mutation Database : CYP19A1 Genetic Association Database: CYP19A1 Human Genome Epidemiology Navigator: CYP19A1 (174 documents)
Medical News for CYP19A1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for CYP19A1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/1872 PubMed articles for CYP19A1 gene (see all 1872
): CYP1B1 and CYP19 gene polymorphisms and breast cancer incidence: no association in the ARIC study. (PubMed id 15072827) 1, 3, 6 Thyagarajan B....Gross M. (2004) Impact of constitutional genetic variation in androgen/oestrogen-regulating genes on age-related changes in human prostate. (PubMed id 12370109) 1, 3, 6 Azzouzi A.R....Cussenot O. (2002) Are the T/C polymorphism of the CYP17 gene and the tetranucleotide repeat (TTTA) polymorphism of the CYP19 gene genetic markers for premature coronary artery disease in Caucasians? (PubMed id 16045239) 1, 3, 6 Letonja M....Petrovic D. (2005) Association of genetic polymorphisms in CYP19 and CYP1A1 with the oestrogen receptor-positive breast cancer risk. (PubMed id 14602139) 1, 3, 6 Miyoshi Y....Noguchi S. (2003) Association of the genetic polymorphism of the CYP19 intron 4[TTTA]n repeat with familial prostate cancer risk in a Japanese population. (PubMed id 14981949) 1, 3, 6 Suzuki K....Yamanaka H. (2003) Genetic polymorphisms of estrogen receptor alpha, CYP19, catechol-O-methyltransferase are associated with familial prostate carcinoma risk in a Japanese population. (PubMed id 14508827) 1, 3, 6 Suzuki K....Yamanaka H. (2003) [Association of polymorphism of genetic markers of CYP19 and CYP17 with sporadic breast cancer] (PubMed id 14714492) 1, 3, 6 Artamonov V.V....Zaletaev D.V. (2003) Association of the CYP17 gene and CYP19 gene polymorphisms with risk of endometriosis in Japanese women. (PubMed id 11925378) 1, 3, 6 Kado N....Honjo H. (2002) CYP19 gene polymorphism in endometrial cancer patients. (PubMed id 11216915) 1, 3, 6 Berstein L.M....Gamajunova V.B. (2001) CYP19 (aromatase) haplotypes and endometrial cancer risk. (PubMed id 15800924) 1, 3, 6 Paynter R.A....De Vivo I. (2005)
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