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Aliases & Descriptions for CHRNA7
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| CHRNA7-2 2 | | NACHRA7 2, 3 |
| | | Descriptions |
|---|
| a7 nicotinic acetylcholine receptor 2 | | alpha 7 neuronal nicotinic acetylcholine receptor 2 | | alpha-7 nicotinic cholinergic receptor subunit 2 | | cholinergic receptor, nicotinic, alpha 7 2 | | cholinergic receptor, nicotinic, alpha polypeptide 7 1, 2 | | neuronal acetylcholine receptor protein, alpha-7 chain 2 |
|
| | Search outside databases for aliases for CHRNA7 genePrevious GC identifers: GC15M026503 GC15P025077 GC15P029901 GC15P030038 |
Summaries for CHRNA7(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for CHRNA7: The nicotinic acetylcholine receptors (nAChRs) are members of a superfamily of ligand-gated ion channels that mediate fast signal transmission at synapses. The nAChRs are thought to be hetero-pentamers composed of homologous subunits. The proposed structure for each subunit is a conserved N-terminal extracellular domain followed by three conserved transmembrane domains, a variable cytoplasmic loop, a fourth conserved transmembrane domain, and a short C-terminal extracellular region. The protein encoded by this gene forms a homo-oligomeric channel, displays marked permeability to calcium ions and is a major component of brain nicotinic receptors that are blocked by, and highly sensitive to, alpha-bungarotoxin. Once this receptor binds acetylcholine, it undergoes an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane. This gene is located in a region identified as a major susceptibility locus for juvenile myoclonic epilepsy and a chromosomal location involved in the genetic transmission of schizophrenia. An evolutionarily recent partial duplication event in this region results in a hybrid containing sequence from this gene and a novel FAM7A gene. [provided by RefSeq] UniProtKB/Swiss-Prot: ACHA7_HUMAN, P36544Function: After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane. The channel is blocked by alpha-bungarotoxinGene Wiki entry for CHRNA7 |
Genomic Location for CHRNA7
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the CHRNA7 gene 
Entrez Gene cytogenetic band: 15q14 Ensembl cytogenetic band: 15q13.3 HGNC cytogenetic band: 15q13.3CHRNA7 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 15 GeneLoc Exon Structure GeneLoc location for GC15P030110:
(about GC identifiers)
Start:
|
30,110,018 bp from pter |
End:
|
30,249,002 bp from pter |
Size:
|
138,985 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000015.8 NT_010194.16
| Proteins for CHRNA7
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: ACHA7_HUMAN, P36544 (See
protein sequence)Recommended Name: Neuronal acetylcholine receptor subunit alpha-7 precursor Size: 502 amino acids; 56449 Da
Subunit: Homopentamer. Interacts with RIC3; which is required for proper folding and assembly
Subcellular location: Cell junction, synapse, postsynaptic cell membrane; Multi-pass membrane protein. Cell membrane; Multi-pass membrane protein
Mass spectrometry: Mass=54157.68; Method=MALDI; Range=23-502; Source=PubMed:11840567;
Secondary accessions: A8K7Q4 Q15826 Q96RH2 Q99555 Q9BXH0Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_000737.1
ENSEMBL proteins: ENSP00000385389 ENSP00000303727
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
5/18 Gene Ontology (GO) cellular component terms (links to tree view) (see all 18
): About this table
Antibodies for CHRNA7: Assays for CHRNA7: | Protein
Domains/ Families for CHRNA7(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P36544
ProtoNet protein and cluster: P36544 2 Blocks protein families: IPB002394 Nicotinic acetylcholine receptor signature IPB006201 Neurotransmitter-gated ion-channel
UniProtKB/Swiss-Prot: ACHA7_HUMAN, P36544Similarity: Belongs to the ligand-gated ionic channel (TC 1.A.9) family | Gene Function for CHRNA7
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000746
Applied Biosystems Silencer® siRNAs for CHRNA7
Sigma-Aldrich siRNA and siRNA Panels for CHRNA7  Sigma-Aldrich shRNA Panels and shRNA for CHRNA7  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000746                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000746                                  untagged cDNA clone in CMV expression vector: NM_000746 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000746
UniProtKB/Swiss-Prot: ACHA7_HUMAN, P36544Function: After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane. The channel is blocked by alpha-bungarotoxinGenatlas biochemistry entry for CHRNA7:cholinergic receptor,nicotinic,alpha 7 polypeptide (alpha-bungarotoxin binding),brain,partially duplicated6 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Chrna7):
5/10 Gene Ontology (GO) molecular function terms (links to tree view) (see all 10
): About this table | Pathways & Interactions for CHRNA7
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
1 Sigma-Aldrich "Your Favorite Gene" Pathway for CHRNA7 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for CHRNA7 
5/35 Interacting proteins for CHRNA7 (ENSP000003037273 P365441) via UniProtKB, MINT, and/or STRING (see all 35
)About this table
5/31 Gene Ontology (GO) biological process terms (links to tree view) (see all 31
): About this table
|
Drugs & Compounds for CHRNA7(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  |
Enzo Life Sciences drugs & compounds for CHRNA7 |
Compounds for CHRNA7 available from Tocris Bioscience About this table
10/19 Novoseek chemical compound relationships for CHRNA7 gene (see all 19
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| alpha-bungarotoxin |
92.93 |
20 |
12614199 (2), 11207427 (2), 10987839 (1), 17254563 (1) (see all 17) |
| 3 (2,4 dimethoxybenzylidene)anabaseine |
89.09 |
2 |
16754836 (1) |
| dihydro-beta-erythroidine |
83.59 |
7 |
15469877 (1), 10082212 (1), 11906789 (1), 15044058 (1) (see all 5) |
| 5-hydroxyindole |
81.39 |
2 |
12243767 (1) |
| quinuclidine |
67.08 |
1 |
11212100 (1) |
| 1,1 dimethyl 4 phenylpiperazinium |
60.48 |
2 |
9808669 (1) |
| 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone |
39.64 |
2 |
15807899 (1), 15161935 (1) |
| calcium |
36.42 |
22 |
15969741 (2), 8996225 (2), 16257255 (2), 16344526 (1) (see all 13) |
| proline |
9.78 |
1 |
10230802 (1) |
| tyrosine |
7.19 |
5 |
15469877 (1), 17709503 (1), 14722323 (1), 11032889 (1) |
About this table
2 PharmGKB drug compound relationships for CHRNA7 geneAbout this table
|
Transcripts for CHRNA7(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000746
Sigma-Aldrich siRNA and siRNA Panels for CHRNA7  Sigma-Aldrich shRNA Panels and shRNA for CHRNA7  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_000746 REFSEQ mRNAs for CHRNA7 gene: NM_000746.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000746               OriGene GFP tagged cDNA clone in CMV expression vector: NM_000746                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000746                                  untagged cDNA clone in CMV expression vector: NM_000746  Additional cDNA sequence: AF385585.1 AJ586911.1 AK292069.1 AK294229.1 AK309709.1 AY909581.1 BC037571.1 CR594008.1 CR620753.1 EF405802.1 EF405803.1 EF405804.1 EF405805.1 EF405806.1 EF405807.1 EF405808.1 EF405809.1 EF405810.1 EF405811.1 EF405812.1 EF405813.1 EF405814.1 EF405815.1 EF405816.1 EF405817.1 EF405818.1 EF405819.1 EF405820.1 L25827.1 U40583.1 U62436.1 X70297.1 Y08420.1 Z23141.1 5 DOTS entries: DT.100778392 DT.100025592 DT.100778393 DT.97837952 DT.100778391 24/71 AceView cDNA sequences (see all 71
):NM_000746 BF507825 AA301331 AI208142 BU149265 CR620753 BX090309 BI963064 BU680930 AI791902 AA897701 BX282644 CR605947 BM451308 BX422848 CR608436 CR594008 AA639641 BC037571 CK903362 U62436 AL519942 BG925223 AA706348
highest scoring ESTs for CHRNA7:X70297 AA426529 AF385585 BC037571 BG395536 BM451308 U40583 U62436 Y08420 Z23141 Unigene Cluster for CHRNA7: Cholinergic receptor, nicotinic, alpha 7 Hs.511772 [show with all ESTs]Unigene Representative Sequence: NM_000746
GeneLoc Exon Structure
2 Ensembl transcripts including schematic representations: ENST00000401522
ENST00000306901
|
Expression for CHRNA7
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| CHRNA7 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for CHRNA7
1 / 2 / 3 3 probe-sets matching CHRNA7 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene cluster: Hs.511772
|
Orthologs for CHRNA7
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for CHRNA7 gene from 5/9 species (see all 9
)
| Organism |
Gene |
Locus |
Description |
Human Similarity |
NCBI accessions |
dog (Canis familiaris) |
CHRNA71 |
-- |
cholinergic receptor, nicotinic, alpha 7 |
91.18(n) 97.17(a) |
488696 XM_545813.2 XP_545813.2 |
chimpanzee (Pan troglodytes) |
CHRNA71 |
-- |
cholinergic receptor, nicotinic, alpha 7 |
99.27(n) 100(a) |
467639 XM_001164138.1 XP_001164138.1 |
cow (Bos taurus) |
CHRNA71 |
-- |
cholinergic receptor, nicotinic, alpha 7 |
87.93(n) 94.57(a) |
282178 NM_174515.2 NP_776940.1 |
rat (Rattus norvegicus) |
Chrna71 |
-- |
cholinergic receptor, nicotinic, alpha 7 |
87.32(n) 93.56(a) |
25302 NM_012832.2 NP_036964.2 |
mouse (Mus musculus) |
Chrna71, 5 |
7 (30.00 cM)5
|
cholinergic receptor, nicotinic, alpha polypeptide more1, 5 |
88.06(n)1 93.96(a)1 |
114411 NM_007390.21 NP_031416.21 AF2259805 AF3253485 (see all 12) |
About this table Species with no ortholog for CHRNA7
ENSEMBL Gene Tree for CHRNA7 | Paralogs for CHRNA7(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for CHRNA7 gene
- CHRFAM7A2
|
SNPs/Variants for CHRNA7(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for CHRNA7 (up to first 250kb)
|
Disorders & Mutations for CHRNA7
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 118511 10/25 Novoseek disease relationships for CHRNA7 gene (see all 25
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| schizophrenia |
73.76 |
121 |
19181484 (6), 16889592 (5), 16134405 (4), 17113175 (4) (see all 54) |
| alzheimers disease |
65.01 |
36 |
11958863 (2), 17493709 (2), 15591800 (2), 19442215 (2) (see all 31) |
| cognitive deficit |
53.70 |
7 |
17094961 (2), 17898229 (1), 17504249 (1), 15695160 (1) (see all 6) |
| senile plaques |
50.14 |
3 |
11958863 (1), 15698636 (1), 10681545 (1) |
| cognitive dysfunction |
47.65 |
2 |
17349863 (1), 17470817 (1) |
| neurodegeneration |
37.08 |
4 |
18180036 (2), 16842101 (1), 15228589 (1) |
| neurodegenerative diseases |
23.18 |
2 |
19287501 (1) |
| psychotic |
22.74 |
1 |
16889592 (1) |
| brain diseases |
19.78 |
3 |
11958863 (1), 10681545 (1), 15858066 (1) |
| bipolar disorder |
16.83 |
8 |
16889592 (3), 14729237 (2), 18545269 (1), 16823804 (1) |
About this table
1 PharmGKB disease relationship for CHRNA7 gene
| Disease |
PharmGKB Relations |
PubMed IDs for articles supporting these relationships |
| Lung Neoplasms | FA   | 12511591 | About this table
Human Gene Mutation Database: CHRNA7 Genetic Association Database: CHRNA7 Human Genome Epidemiology Navigator: CHRNA7 (36 documents)
|
Medical News for CHRNA7(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for CHRNA7 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/274 PubMed articles for CHRNA7 gene (see all 274
):- Molecular cloning and chromosomal localization of the human alpha 7- nicotinic receptor subunit gene (CHRNA7). (PubMed id 8188270)2, 3, 4 Chini B....Heinemann S.F. (1994)
- Association of promoter variants in the alpha7 nicotinic acetylcholine receptor subunit gene with an inhibitory deficit found in schizophrenia. (PubMed id 12470124)1, 3, 6 Leonard S....Freedman R. (2002)
- A 3-Mb map of a large segmental duplication overlapping the alpha7- nicotinic acetylcholine receptor gene (CHRNA7) at human 15q13-q14. (PubMed id 11829490)1, 3, 4 Riley B.... Makoff A. (2002)
- Evidence for linkage disequilibrium between the alpha 7-nicotinic receptor gene (CHRNA7) locus and schizophrenia in Azorean families. (PubMed id 11803513)1, 3, 6 Xu J....Pato C.N. (2001)
- Association study of the human partially duplicated alpha7 nicotinic acetylcholine receptor genetic variant with bipolar disorder. (PubMed id 14729237)1, 3, 6 Hong C.J....Tsai S.J. (2004)
- Comparison of polymorphisms in the alpha7 nicotinic receptor gene and its partial duplication in schizophrenic and control subjects. (PubMed id 14582144)1, 3, 6 Gault J....Leonard S. (2003)
- Ric-3 promotes functional expression of the nicotinic acetylcholine receptor alpha7 subunit in mammalian cells. (PubMed id 15504725)1, 3, 4 Williams M.E.... Aiyar J. (2005)
- Identification of molecular variants at the promoter region of the human alpha 7 neuronal nicotinic acetylcholine receptor subunit gene but lack of association with schizophrenia. (PubMed id 15531077)1, 3, 6 Li C.H....Chen C.H. (2004)
- Association analysis of the partially duplicated alpha7 nicotinic acetylcholine receptor genetic variant and Alzheimer's disease. (PubMed id 11455129)1, 3, 6 Liou Y.J....Tsai S.J. (2001)
- Why do young women smoke? I. Direct and interactive effects of environment, psychological characteristics and nicotinic cholinergic receptor genes. (PubMed id 16314871)3, 6 Greenbaum L....Lerer B. (2006)
|
Search for CHRNA7
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing CHRNA7
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing CHRNA7
(According to HUGE)
About This Section
| -- |
Specialized Databases showing CHRNA7(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| Licensable Technologies for CHRNA7 gene:
| Services for CHRNA7(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for CHRNA7:

|
GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
|