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ADRA1D Gene

protein-coding   GIFtS: 66

GC20M004149
adrenergic, alpha-1D-, receptor
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
ADRA1 1, 2
ADRA1A 1, 2, 3, 5
ADRA1R 1, 2
ALPHA1 2
DAR 2
OTTHUMP00000030160 2
dJ779E11.2 2
Descriptions
Alpha 1D-adrenoceptor 3
Alpha 1D-adrenoreceptor 3
Alpha-1A adrenergic receptor 3
Alpha-adrenergic receptor 1a 3
adrenergic, alpha -1D-, receptor 2
adrenergic, alpha-1A-, receptor 2
adrenergic, alpha-1D-, receptor 2
alpha-1D-adrenergic receptor 2
External Ids
HGNC: 2801
Entrez Gene: 1462
UniProtKB: P251003
Ensembl: ENSG000001718737
Search outside databases for aliases for ADRA1D gene

Previous GC identifers: GC20M004189 GC20M004196

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for ADRA1D:
Alpha-1-adrenergic receptors (alpha-1-ARs) are members of the G protein-coupled receptor
superfamily. They activate mitogenic responses and regulate growth and proliferation of many
cells. There are 3 alpha-1-AR subtypes: alpha-1A, -1B and -1D, all of which signal through the
Gq/11 family of G-proteins and different subtypes show different patterns of activation. This gene
encodes alpha-1D-adrenergic receptor. Similar to alpha-1B-adrenergic receptor gene, this gene
comprises 2 exons and a single intron that interrupts the coding region. [provided by RefSeq]

UniProtKB/Swiss-Prot: ADA1D_HUMAN, P25100
Function: This alpha-adrenergic receptor mediates its effect through the influx of extracellular
calcium

Gene Wiki entry for ADRA1D (Alpha-1D_adrenergic_receptor)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the ADRA1D gene  

Entrez Gene cytogenetic band: 20p13   Ensembl cytogenetic band:  20p13   HGNC cytogenetic band: 20p13

ADRA1D Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 20         GeneLoc Exon Structure

GeneLoc location for GC20M004149:     (about GC identifiers)

Start:
4,149,278 bp from pter
End:
4,177,659 bp from pter
Size:
28,382 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000020.9  NT_011387.8  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: ADA1D_HUMAN, P25100 (See protein sequence)
Recommended Name: Alpha-1D adrenergic receptor  
Size: 572 amino acids; 60463 Da
Subcellular location: Cell membrane; Multi-pass membrane protein
Secondary accessions: Q9NPY0

REFSEQ proteins: NP_000669.1  

ENSEMBL proteins: 
ENSP00000368766 


Human Recombinant Proteins 
Browse Drug Discovery Central at Invitrogen for human recombinant proteins
Browse Purified and Recombinant Proteins at Millipore
Browse Human Recombinant Proteins at Sigma-Aldrich  
Browse R&D Systems for human recombinant proteins
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (alpha 1 Adrenergic Receptor, alpha 1d Adrenergic Receptor)
Browse Abnova for Human Recombinant Proteins
                Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

2 Gene Ontology (GO) cellular component terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005886 plasma membrane IEA--
GO:0005887 integral to plasma membrane TAS7746284
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Antibodies for ADRA1D: 
Browse Antibodies Central at Invitrogen
Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
Sigma-Aldrich Antibodies for ADRA1D
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Antibodies from Abcam (alpha 1 Adrenergic Receptor, alpha 1d Adrenergic Receptor), each with their AbpromiseSM
Browse Abnova for Monoclonal and Polyclonal Antibodies
Novus Biologicals Antibody for ADRA1D

Assays for ADRA1D: 
Browse Invitrogen for biochemical assays
Browse Kits and Assays available from Millipore
Browse R&D Systems for biochemical assays
Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

4 InterPro domains/families:
 IPR000363 Adren_rcpt_A1A
 IPR017452 GPCR_Rhodpsn_supfam
 IPR002233 Adrnrgc_rcpt
 IPR000276 7TM_GPCR_Rhodpsn


   GeneDecks  ADRA1D for the domains selected above  
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Graphical View of Domain Structure for InterPro Entry P25100

ProtoNet protein and cluster: P25100

2 Blocks protein families:
IPB000363 Alpha-1A adrenergic receptor signature
IPB002233 Adrenergic receptor signature


UniProtKB/Swiss-Prot: ADA1D_HUMAN, P25100
Similarity: Belongs to the G-protein coupled receptor 1 family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (ADRA1D)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (ADRA1D)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000678

              Applied Biosystems Silencer® siRNAs for ADRA1D

              Sigma-Aldrich siRNA and siRNA Panels for ADRA1D  
                     Sigma-Aldrich shRNA Panels and shRNA for ADRA1D  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Browse Clone Ranger at Invitrogen for clones
Browse Clones for the Expression of Recombinant Proteins Available from Millipore
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000678
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_000678
                                 untagged cDNA clone in CMV expression vector: NM_000678 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_000678

UniProtKB/Swiss-Prot: ADA1D_HUMAN, P25100
Function: This alpha-adrenergic receptor mediates its effect through the influx of extracellular
calcium

Genatlas biochemistry entry for ADRA1D:
adrenergic,alpha-1D-,receptor,G protein coupled receptor superfamily,stimulating,acting through the
phosphadidylinositol/Ca2+ second messenger system

5 MGI mutant phenotypes (inferred from 2 alleles(MGI details for Adra1d):

behavior/neurologicalhearing/vestibular/earmusclenervous system

4 Gene Ontology (GO) molecular function terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0004872 receptor activity IEA--
GO:0004930 G-protein coupled receptor activity IEA--
GO:0004935 adrenoceptor activity IEA--
GO:0004937 alpha1-adrenergic receptor activity TAS10820200
About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

1 Invitrogen iPath™ Online BioAtlas - Pathway for ADRA1D (Maps provided by GeneGo):
 Gqa specific GPCRs (in brain)

   GeneDecks  ADRA1D for the pathways selected above  
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2 Millipore Pathways for ADRA1D
 Translation Translation regulation by Alpha-1 adrenergic receptors
 Development Activation of ERK by Alpha-1 adrenergic receptors

   GeneDecks  ADRA1D for the pathways selected above  
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for  ADRA1D  (Your Favorite Gene powered by Ingenuity) 
 G-Protein Coupled Receptor Signaling
 Cardiac Hypertrophy Signaling

   GeneDecks  ADRA1D for the pathways selected above  
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3 Kegg Pathways  (Kegg details for ADRA1D):
 hsa04020 Calcium signaling pathway
 hsa04080 Neuroactive ligand-receptor interaction
 hsa04270 Vascular smooth muscle contraction

   GeneDecks  ADRA1D for the pathways selected above  
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 Gene Network CentralTM Interacting Genes and Proteins Network for  ADRA1D 


5/11 Interacting proteins for ADRA1D (ENSP000003687663) via UniProtKB, MINT, and/or STRING (see all 11 )
InteractantInteraction Details
GeneCardExternal ID(s)
ADRA1AENSP000003487293STRING (score=.962)
ADRA1BENSP000003066623STRING (score=.904)
GNAQENSP000002865483STRING (score=.902)
GNA11ENSP000000784293STRING (score=.86)
ELANEENSP000002636213STRING (score=.809)
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5/9 Gene Ontology (GO) biological process terms (links to tree view) (see all 9 ):

GO IDQualified GO termEvidencePubMed IDs
GO:0001986 negative regulation of the force of heart contraction during baroreceptor response to increased systemic arterial blood pressure IEA--
GO:0001994 norepinephrine-epinephrine vasoconstriction involved in regulation of systemic arterial blood pressure IEA--
GO:0006259 DNA metabolic process TAS10969806
GO:0007165 signal transduction IEA--
GO:0007186 G-protein coupled receptor protein signaling pathway TAS1656955
About this table
(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Enzo Life Sciences drugs & compounds for ADRA1D
Sigma-Aldrich Small Molecules for ADRA1D:
Antagonist Agonist

Compounds for ADRA1D available from Tocris Bioscience
CompoundAction CAS number
Naftopidil hydrochloridealpha1 antagonist[57149-07 2]
Cirazoline hydrochlorideSelective alpha1 agonist[40600-13-3]
alpha-Conotoxin MIIPotent alpha3beta2 and beta3 subunit selective nicotinic antagonist
HEAT hydrochlorideHighly selective alpha1 antagonist[30007-39-7]
Prazosin hydrochloridealpha1 antagonist. MT3 antagonist[19237-84-4]
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2 PharmGKB drug compound relationships for ADRA1D gene
Drug compound PharmGKB Relations PubMed IDs for articles supporting these relationships
mercaptopurinePD  FA  GN  12704389
methotrexatePD  FA  GN  12704389
About this table


(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (ADRA1D)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (ADRA1D)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000678

              Sigma-Aldrich siRNA and siRNA Panels for ADRA1D  
                     Sigma-Aldrich shRNA Panels and shRNA for ADRA1D  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_000678  

REFSEQ mRNAs for ADRA1D gene: 

NM_000678.3   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_000678  

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000678
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_000678
                                 untagged cDNA clone in CMV expression vector: NM_000678 

Additional cDNA sequence: 

L31772.1 S70782.1 U03864.1 

4 DOTS entries:

DT.442233  DT.92416103  DT.95254294  DT.95357194 

21 AceView cDNA sequences:

BX280890 AI457674 CA424283 BE439970 U03864 BI828457 NM_000678 CA310090 
L31772 AI611270 S70782 AW875208 AW975996 AA809802 M76446 AW875213 
BM546478 AA921964 AA909273 BQ067091 AW577200 

highest scoring ESTs for ADRA1D:

AA909273 AI457674 L31772 M76446 S70782 U03864 AA921964 AW577200 NM_000678 AA809802 

Unigene Cluster for ADRA1D:

Adrenergic, alpha-1D-, receptor
Hs.557  [show with all ESTs]
Unigene Representative Sequence: NM_000678


GeneLoc Exon Structure

1 Ensembl transcript including schematic representation:
ENST00000379453  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

ADRA1D expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for ADRA1D

1 / 2 / 3

7 probe-sets matching ADRA1D gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
36729_g_at2, 3 U95-A 1 1.00 1.00 0.68 0.96 M76446 0.80 1.00 0.91 1

36728_at2, 3 U95-A 1 1.00 1.00 0.65 0.78 M76446 0.80 1.00 0.91 1
90822_at2, 3 U95-D 1 0.94 1.00 0.60 1.28 AA921964 0.60 1.00 0.82 1

210961_s_at2, 3 U133-A 1 1.00 1.00 -- -- M76446 0.80 1.00 0.91 1

210960_at2, 3 U133-A 1 1.00 1.00 -- -- M76446 0.80 1.00 0.91 1

210961_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

210960_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
GeneDecks  ADRA1D for binary patterns associated with the probe-sets selected above  
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About this table    
Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: GGCCCGCTGT

SOURCE GeneReport for Unigene cluster: Hs.557

Expression variation in blood from EXPOLDB for ADRA1D

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for ADRA1D gene from 5/7 species (see all 7 )
Organism Gene Locus Description Human
Similarity
NCBI accessions
chimpanzee
(Pan troglodytes)
ADRA1D1   -- adrenergic, alpha-1D-, receptor 99.76(n)
99.27(a)
469869  XM_525254.2  XP_525254.2 
cow
(Bos taurus)
ADRA1D1   -- adrenergic, alpha-1D-, receptor 83.39(n)
82.74(a)
539543  XM_587980.3  XP_587980.3 
rat
(Rattus norvegicus)
Adra1d1   -- adrenergic, alpha-1D-, receptor 83.36(n)
86.99(a)
29413  NM_024483.1  NP_077809.1 
mouse
(Mus musculus)
Adra1d1, 5 2 (74.90 cM)5
adrenergic receptor, alpha 1d1, 5 83.51(n)1
86.83(a)1
115501  NM_013460.41  NP_038488.41 
 AB0306425  AL8317315  (see all 8)
chicken
(Gallus gallus)
ADRA1D1   -- adrenergic, alpha-1D-, receptor 68.35(n)
64.65(a)
422933  XM_420871.2  XP_420871.2 
About this table        Species with no ortholog for ADRA1D

ENSEMBL Gene Tree for ADRA1D
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

Paralogs for ADRA1D gene
ADRA1A2  ADRA1B2  HRH22  

(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section


10/288 NCBI SNPs in ADRA1D are shown (see all 288 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 71)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 20 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
rs22365541,2
A,C,F,H4150041(+) GGATGT/ACACAG 1 -- ut316Minor allele frequency- A:0.27EA EU WA 2088
rs7090241,2
A,C,F,H4149984(+) CCCCAT/CTACTT 1 -- ut317Minor allele frequency- C:0.35EA MN EU WA 2276
rs7090231,2
A,C,F,H4149130(+) GACAAT/ATTGTG 1 -- ng518Minor allele frequency- A:0.25EU EA WA 838
rs38105681,2
C,F,H4179258(+) AGGCCT/CGTTTG 1 -- ng314Minor allele frequency- C:0.18EU EA WA 418
--
rs38105661,2
C4178503(+) GAAGAG/TAGCCC 1 -- ng310--------
--
rs75087861,2
C4149913(+) AAAGGC/TCCCAC 1 -- ut310--------
rs38039641,2
F,H4177218(+) GTGACG/AGTCTG 1 T/T syn1 ese35Minor allele frequency- A:0.10EA EU WA 1904
rs15568321,2
A,C,F,H,O4163557(+) AGGACC/TGCCAA 1 -- int112Minor allele frequency- T:0.28EA NA EU WA 974
--
rs23264781,2
A,C,F,H,O4156247(+) CTTCAC/TGTTAC 1 -- int17Minor allele frequency- N:0.00EU EA NA 510
rs8358791,2
A,C,F,H,O4156227(+) CTCGAG/CTTTCT 1 -- int15Minor allele frequency- C:0.17EA NA 292
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HapMap Linkage Disequilibrium images for ADRA1D (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 104219

3 Novoseek disease relationships for ADRA1D gene

Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
benign prostatic hyperplasia 44.93 1 17254786 (1)
essential hypertension 33.24 3 16685204 (2)
obstruction 1.31 1 15112040 (1)
About this table

1 PharmGKB disease relationship for ADRA1D gene
Disease PharmGKB Relations PubMed IDs for articles supporting these relationships
Leukemia, Lymphocytic, Acute, L1PD  FA  GN  12704389
About this table

Genetic Association Database: ADRA1D
Human Genome Epidemiology Navigator: ADRA1D (3 documents)

(Possibly Related Articles in Doctor's Guide)
About This Section

  --

(in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
About This Section

10/61 PubMed articles for ADRA1D gene (see all 61 ):
(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)
(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 146 HGNC: 280 AceView: ADRA1D Ensembl:ENSG00000171873 euGenes: HUgn146
ECgene: ADRA1D H-InvDB: ADRA1D
(According to HUGE)
About This Section

  --
(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

  --
(Available from WIS Yeda, Salk, Tufts)
About This Section

  --
(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section



Products for ADRA1D:
 TaqMan ® Gene Expression Assays
 TaqMan ® Genotyping Assays
  Free SNP selection tool



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 Predesigned and custom siRNAs for ADRA1D Antibodies for ADRA1D
 Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
 Lentivirus-delivered shRNAs for ADRA1D Small molecules for ADRA1D
 "Your Favorite Gene" Pathwaysfeedback


  
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 Recombinant Proteins
(alpha 1 Adrenergic Receptor, alpha 1d Adrenergic Receptor)
 Antibodies (alpha 1 Adrenergic Receptor, alpha 1d Adrenergic Receptor)
 Search OriGene for ADRA1D
 Tocris compounds for ADRA1D




 Drugs for ADRA1D
 Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
 Antibodies for ADRA1D

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