Output format and separators:

• Fields are separated by tabs
• List Items are separated by pipes (|)
• Information on items is separated from the items by the sharp symbol (#)
• Nested list items are separated by double pipes (||)
  
  Example of a complex field output:
  Allele1: MGI_id1#Phenotypes: |Allele2: MGI_id2#Phenotypes: phenotype_id1#phenotype_name||phenotype_id2#phenotype_name...

The fields that are currently available to be downloaded are the following (other fields will be available in future versions):

GeneCards section	Queried fields	Sources
Gene Symbol		HGNC, NCBI, Ensembl
GeneCards ID	GeneCards ID	GeneCards, GeneLoc
Category	Category	Entrez Gene, Ensembl, GeneCards
Gene Description		HGNC, Entrez Gene
Approval	Approved, Not approved	HGNC
Source		HGNC, Entrez Gene, Ensembl
Aliases and Descriptions	Aliases, Descriptions	HGNC, UniProt, SwissProt, TrEMBL, NCBI, GDB, OMIM, GeneLoc
Genomic Location	Chromosome, strand, cytogenetic band, genomic location start/end, gene size, Mapped to contig (flag if the information is not genomic)	GeneLoc, NCBI, Ensembl, Entrez Gene, HGNC, HORDE, miRBase
Proteins	Aliases, UniProt ID, protein name, size, cofactor, subunit, subcellular location, tissue specificity, developmental stage, ptm, miscellaneous, RefSeq ID, Ensembl ID	UniProt, Entrez Gene(NCBI), Ensembl
Protein Domains / Families	InterPro domains, UniProt ID, UniProt domains, UniProt similarities	EBI, UniProt
Gene Function	UniProt ID, UniProt function, MGI mutant phenotype	UniProt, MGD
Ontologies	GO ID, GO term	GO
Pathways and Interactions	KEGG ID, KEGG pathway description, Invitrogen ID, Invitrogen pathway description, CST(Cell Signaling Technology) ID, CST pathway description	KEGG, iPath, CST
AKS compounds	Compound name	AKS
Transcripts	Refseq transcripts, Unigene cluster, Unigene cluster description	RefSeq, Unigene
Expression in Human tissues	U95 probe-sets, binary expression patterns in tissues ordered as in the GeneCards display, sensitivity, specificity	GeneNote, GeneAnnot
Similar Genes in Other Organisms	Organism, gene, percent protein similarity to the human gene, percent nucleotide similarity to the human gene	HomoloGene, euGenes
HomoloGene Paralogs	gene	HomoloGene
Ensembl Paralogs	gene	Ensembl
SNPs/Variants	number of NCBI snps, NCBI ID, location type, populations studied, validation, position, amino acid change, sequence, number of sources number of additional AB snps, AB ID	NCBI, AB
OMIM disorders	OMIM ID, Disorder description	OMIM
UniProt disorders	UniProt ID, Disorder description	UniProt
AKS disorders	Disorder description	AKS
Other Genome Wide Resources	EntrezGene ID, Ensembl ID	NCBI, Ensembl

Field formats

GeneCards_ID

gc_id

Category

protein-coding, pseudogene, RNA gene, genetic locus, gene cluster, or uncategorized

Gene Description

Gene description according to HGNC or Entrez Gene

Approval

Approved, not approved according to HGNC

Source

Gene symbol from HGNC, Entrez Gene or Ensembl

Aliases

alias1|alias2|alias3|...

Descriptions

description1|description2|description3|...

Chromosome

1-22 or X,Y,MT (mitochondria). NA appears where chromosome is unknown.

Strand

Plus, Minus or NA (where strand is unknown)

Cytogenetic band

Cytogenetic band according to Entrez Gene, Ensembl and/or HGNC

Gene start

chromosomal coordinate in bp from pter

Gene end

chromosomal coordinate in bp from pter

Gene size

size of genomic sequence in bp

UniProt Protein details

source:aliases|uniprot protein_id1#protein name#size#cofactor & cofactor#subunit & subunit#subcellular location & subcellular location#tissue specificity & tissue specificity# developmental stage & developmental stage#ptm & ptm#miscellaneous & miscellaneous|
uniprot protein_id2#protein name#size#cofactor..#subunit..#subcellular location..#tissue specificity..#developmental stage..#ptm..#miscellaneous..|
uniprot protein_id3#protein name#size#cofactor..#subunit..#subcellular location..#tissue specificity..#developmental stage..#ptm..#miscellaneous..|...

RefSeq Protein ID

refseq protein_id1|refseq protein_id2|refseq protein_id3|...

Ensembl Protein ID

ensembl protein_id1|ensembl protein_id2|ensembl protein_id3|...

InterPro domains and families

InterPro_id1#domain_name|InterPro_id2#domain_name...

UniProt Domains and Families

source:uniprot_id1#domain & domain..#similarity & similarity..|uniprot_id2#domain & domain..#similarity & similarity..|uniprot_id3#domain & domain..#similarity & similarity..|...

Gene Function - UniProt

source:uniprot_id1#function|uniprot_id2#function|uniprot_id3#function...

Gene Function - MGI mutant phenotype

Allele1: MGI_id1#Phenotypes: |Allele2: MGI_id2#Phenotypes: phenotype_id1#phenotype_name||phenotype_id2#phenotype_name...

Gene Ontologies (GO)

go_id1#go_term1|go_id2#go_term2|go_id3#go_term3|...

Pathways (KEGG)

kegg_id1#kegg_pathway1|kegg_id2#kegg_pathway2|kegg_id3#kegg_pathway3|...

Pathways (Invitrogen)

Invitrogen_id1#Invitrogen_pathway1|Invitrogen_id2#Invitrogen_pathway2|Invitrogen_id3#Invitrogen_pathway3|...

Pathways (CST)

cst_id1#cst_pathway1|cst_id2#cst_pathway2|cst_id3#cst_pathway3|...

AKS Compounds

compound1|compound2|compound3|...

Transcripts (Refseq)

transcript1|transcript2|transcript3|...

Transcripts (Unigene)

ug_cluster1#description|ug_cluster2#description|ug_cluster3#description...

Expression in Human tissues

probe-set_id1#binary_pattern1#sensitivity1#specificity1|probe-set_id2#binary_pattern2#sensitivity2#specificity2|probe-set_id3#binary_pattern3#sensitivity3#specificity3...

Similar Genes in Other Organisms

organism1#gene1#percent protein similarity#percent nucleotide similarity|organism2#gene2#percent protein similarity#percent nucleotide similarity|organism3#gene3#percent protein similarity#percent nucleotide similarity|...

The organisms are depicted by their two or three letter acronyms as follows:

Acronym	Scientific name	Common name
Aga	Anopheles gambiae	African malaria mosquito
At	Arabidopsis thaliana	Thale cress
Bt	Bos taurus	Cow
Cel	Caenorhabditis elegans	Worm
Cfa	Canis familiaris	Dog
Cin	Ciona intestinalis	Sea squirt
Cre	Chlamydomonas reinhardtii	Green algae
Ddi	Dictyostelium discoideum	Amoeba
Dm	Drosophila melanogaster	Fruit fly
Dr	Danio rerio	Zebrafish
Eg	Ashbya gossypii	A. gosspyii yeast
Gga	Gallus gallus	Chicken
Gma	Glycine max	Soybean
Hv	Hordeum vulgare	Barley
Kl	Kluyveromyces lactis	K. lactis yeast
Les	Lycopersicon esculentum	Tomato
Mgr	Magnaporthe grisea	Rice blast fungus
Mm	Mus musculus	Mouse
Mtr	Medicago truncatula	Medicago trunc
Ncr	Neurospora crassa	Bread mold
Omy	Oncorhynchus mykiss	Rainbow trout
Os	Oryza sativa	Rice
Pf	Plasmodium falciparum	Malaria parasite
Pt	Pan troglodytes	Chimpanzee
Pta	Pinus taeda	Loblolly pine
Rn	Rattus norvegicus	Rat
Sbi	Sorghum bicolor	Sorghum
Sc	Saccharomyces cerevisiae	Baker's yeast
Sma	Schistosoma mansoni	Schistosome parasite
Sof	Saccharum officinarum	Sugarcane
Sp	Schizosaccharomyces pombe	Fission yeast
Ssc	Sus scrofa	Pig
Str	Silurana tropicalis	Tropical clawed frog
Ta	Triticum aestivum	Wheat
Tgo	Toxoplasma gondii	Toxoplasmosis
Vva	Vitis vinifera	Alicante grape
Xl	Xenopus laevis	African clawed frog
Zm	Zea mays	Corn

Homologene Paralogs

gene1|gene2|gene3|...

Ensembl Paralogs

gene1|gene2|gene3|...

Snps (NCBI)

number of snps: ncbi_id1#location type#populations studied#validation#position#amino acid change#sequence#number of sources|ncbi_id2#location type#populations studied#validation#position#amino acid change#sequence#number of sources...

Snps (AB)

additional number of snps: ab_id1, ab_id2, ab_id3...

Disorders - Omim_ID & disorder description

omim_id#disorder1|disorder2|disorder3|...

UniProt Disorders

source:uniprot_id1#disorder & disorder..|uniprot_id2#disorder & disorder..|uniprot_id3#disorder & disorder..|...

AKS Disorders

disorder1|disorder2|disorder3|...

EntrezGene_ID

entrezgene_id

Ensembl_ID

ensembl_id